Next-generation sequencing data analysis solutions
We provide all stages of next-generation sequencing data analysis, as well as interpretation of NGS data and document (manuscript, proposal or product description) preparation.
Examples of NGS data analysis modules:
| Whole-genome sequencing | QC of FASTQ & BAM/SAM, Genotype calling, QC of variants (whole-sample & invididual), VCF file merging, allele-frequency computing, functional annotation, population stratification |
| RNA-seq | QC of FASTQ & BAM/SAM, FPKM generation, differential expression analysis, coexpression network analysis |
| ChIP-seq | QC of FASTQ & BAM/SAM, peak calling |
| GWAS | Population stratification, genomic control, association test, functional annotation, gene analysis, pathway analysis, epistatic interactions |
| Rare variant analysis | Allele frequency computing, rare variant collapsing, burden test, functional annotation, gene analysis, pathway analysis, epistatic interactions, pretective variant discovery |
| Network analyses | Weighted gene coexpression network analysis, consensus network analysis, differential gene network analysis, association between variants and gene networks, functional module detection, disease module detection |